Peach: a simple Perl-based system for distributed computation and its application to cryo-EM data processing.
نویسندگان
چکیده
A simple distributed processing system named "Peach" was developed to meet the rising computational demands of modern structural biology (and other) laboratories without additional expense by using existing hardware resources more efficiently. A central server distributes jobs to idle workstations in such a way that each computer is used maximally, but without disturbing intermittent interactive users. As compared to other distributed systems, Peach is simple, easy to install, easy to administer, easy to use, scalable, and robust. While it was designed to queue and distribute large numbers of small tasks to participating computers, it can also be used to send single jobs automatically to the fastest currently available computer and/or survey the activity of an entire laboratory's computers. Tests of robustness and scalability are reported, as are three specific electron cryomicroscopy applications where Peach enabled projects that would not otherwise have been feasible without an expensive, dedicated cluster.
منابع مشابه
Computational Challenges in High - Resolution Cryo - Electron Microscopy
To avoid the challenges of crystallization and the size limitations of NMR, it has long been hoped that single-particle cryo-electron microscopy (cryo-EM) would eventually yield atomically interpretable reconstructions. For the most favorable class of specimens (large icosahedral viruses), two of the key obstacles are the large computational requirements of high-resolution reconstructions and t...
متن کاملDesenvolvimento de Aplicações em Perl com FreeLing 3
FreeLing is a tool for processing natural languages, especially for morphological analysis and computation of dependency trees. Although C++ is a suitable language to implement this kind of tool given its efficiency, it makes it difficult to develop small tools. Also, the Perl interface available with the FreeLing package is not much more than a simple map from the C++ API to Perl, which isn’t ...
متن کاملGIS-based NEXRAD Stage III precipitation database: automated approaches for data processing and visualization
This study develops a geographical information system (GIS) approach for automated processing of the Next Generation Weather Radar (NEXRAD) Stage III precipitation data. The automated processing system, implemented by using commercial GIS and a number of Perl scripts and C/C++ programs, allows for rapid data display, requires less storage capacity, and provides the analytical and data visualiza...
متن کاملAn Insight into Commutative Algebra Based Informatics & Computational Architecture for Cryo-EM Image Processing involving Gröbner Bases Using C++/Java/HOL/Scala/Scalalab/ImageJ Software Environments – A Short Communication on Gröbner Bases With Applications in Signals and Systems Using JikesRVM/JVM
In this research communication on commutative algebra it was proposed to deal with Grobner Bases and its applications in signals and systems domain.This is one of the pioneering communications in dealing with Cryo-EM Image Processing application using multi-disciplinary concepts involving thermodynamics and electromagnetics based on first principles approach. keywords: Commutative Algebra/HOL/S...
متن کاملEntropy-based Consensus for Distributed Data Clustering
The increasingly larger scale of available data and the more restrictive concerns on their privacy are some of the challenging aspects of data mining today. In this paper, Entropy-based Consensus on Cluster Centers (EC3) is introduced for clustering in distributed systems with a consideration for confidentiality of data; i.e. it is the negotiations among local cluster centers that are used in t...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Structure
دوره 13 4 شماره
صفحات -
تاریخ انتشار 2005